12 Best Quickbooks Online Apps for Shopify

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shopify and quickbooks online

Last Updated: April 2024

Looking to optimize your financial management for Shopify and QuickBooks Online? Look no further! Integrating Shopify with QuickBooks apps can be a game-changer for your business. 

In this article, we unveil the 12 Best QuickBooks Online Apps, meticulously designed to synchronize your Shopify store’s financial data effortlessly. Boost productivity, accuracy, and profits with these groundbreaking tools.

Get ready to explore the 12 top-rated QuickBooks Online apps tailored to elevate your Shopify store’s financial prowess. Let’s dive in!

1. Quickbook Sync by Bold

shopify and quickbooks online

Rating: ⭐ 3.6

Pricing: Starting at $19.99/month with a 14-day free trial

Discover the reliable ‘Quicjbook Sync by Bold,’ trusted by Shopify stores and accounting teams. 

Streamline financial reporting, payment management, and inventory tracking effortlessly. Sync all products, line items, sales, taxes, shipping, gift cards, and refunds with ease.

Key Features

  • Automated Order and Refund Import: Import orders and refunds from Shopify to QuickBooks.
  • Seamless Product and Inventory Sync: Synchronize products and inventory directly from QuickBooks to Shopify.
  • Payout Fees and Adjustments Export: Easily export payout fees and adjustments from Shopify Payments to QuickBooks.

2. QuickBooks Online Global

shopify and quickbooks online

Rating: ⭐ 4.9

Pricing: Starting at $30/month, a free plan is available.

Selling internationally? Connect all your Shopify storefronts to QuickBooks Online to track income and expenses and optimize tax deductions. 

As well as automated invoicing, customer, and product entries by seamlessly linking Shopify with QuickBooks Online.

Key Features

  • Financial Optimization for Your Shopify Business: Track income and expenses to maximize tax deductions.
  • Streamlined Sales Data Import: Seamlessly import sales data from Shopify into QuickBooks Online.
  • Error-Reduction and Simplified Data Entry: Minimize mistakes and manual data entry by eliminating shortcuts for smoother operations.

3. QuickBooks Bridge

shopify and quickbooks online

Rating: ⭐ 4.9

Pricing: Starting at $10/month with a 7-day free trial

QuickBooks Bridge effortlessly syncs your sales data to QuickBooks Online in an automated manner, offering both Individual order and Summary sync options.

Moreover, export all your Orders, Products, and Customer data to QuickBooks automatically with the Individual Orders feature.

Key Features

  • Individual Order Sync: With this sync customers, Products, Taxes, and all other details to streamline financial management.
  • Summary Invoice: Create Invoices based on payment methods for quick and easy reconciliation.
  • Automated Sync Process: Enjoy a seamless, automated synchronization process for enhanced efficiency and accuracy.

4. ChannelApe IOMS

shopify and quickbooks online

Rating: ⭐ 4.8

Pricing: Free

Open up a world of streamlined brand operations with ‘ChannelApe IOMS.’ Its dashboards offer real-time consolidation of crucial metrics, providing a comprehensive overview of your business’s performance. 

Furthermore, seamlessly manage purchasing, sales, operations, fulfillment/3PL, and finance, empowering your brand with one platform and one cohesive team for enhanced margins.

Key Features

  • Inbound and On-Hand Inventory Management: Effectively manage inbound and on-hand inventory with seamless warehouse and inbound integration.
  • Advanced Management: Take control of features like bundling, preselling, reserving, and setting expiration dates.
  • Robust Order Management Rules: Enhance order processing with powerful rules for holds, routing, edits, fraud prevention, VIP handling, and more.

5. QuickBooks sync by Webgility

shopify and quickbooks online

Rating: ⭐ 4.8

Pricing: Starting at $69/month with a 15-day free trial

Now, say goodbye to manual data entry woes as Webgility solutions empower you to focus on business growth and scalability. 

Additionally, it Seamlessly manages and synchronizes orders and inventory across all your sales channels and QuickBooks, ensuring your books and inventory are consistently accurate and up-to-date.

Key Features

  • Streamline Bookkeeping Effortlessly: Eliminate manual bookkeeping for orders, taxes, and fees.
  • Real-Time Income Recording: Record income with each transaction or payout in real-time.
  • Hassle-Free Book Closures: Close your books with ease; bank deposits neatly match your books.

6. Connex for QuickBooks

shopify and quickbooks online

Rating: ⭐ 3.6

Pricing: Starting at $499/month with a 14-day free trial

Connex for QuickBooks is where peace of mind awaits you. Rest easy knowing your orders are flawlessly synced and your financial data in QuickBooks is impeccably accurate. 

Also, with its seamless integration, you can confidently manage your business without worrying about discrepancies or errors.

Key Features

  • Automatic Multi-Store Sync to QuickBooks: Multiple stores synchronization to QuickBook without manual intervention.
  • Time-Saving Payout Matching: Automatically match online payouts with bank deposits, saving valuable hours.
  • Cost-Efficient Data Entry Elimination: Eliminate the need for manual data entry, saving tens of thousands of dollars in hiring costs.

7. Bookkeep Accounting Automation

Rating: ⭐ 4.7

Pricing: Starting at $60/month with a 14-day trial

Experience seamless accounting with Bookkeeping and accounting automation.’ Generate Shopify sales summaries, cost of goods sold, and payment deposits automatically, ensuring your financial data is always up-to-date. 

Besides this, benefit from support for multi-currency, fulfillment-based revenue recognition, sales tax withholding, and historical imports.

Key Features

  • Streamlined Daily Order Summaries: Summarize all orders each day in one manageable journal entry per currency.
  • Effortless Chart of Accounts Integration: Connect and map your chart of accounts from QuickBooks, Zoho Books, or Xero.
  • Error-Free Data Posting: Get accurate data posted each time, regardless of refunds, exchanges, or fees.

8. QuickBooks Online and Commerce

Rating: ⭐ 3.9

Pricing: Starting at $35/month

Embark on a seamless business management journey with ‘QuickBooks Online and Commerce.’ This powerful integration offers you an all-in-one solution, combining the organizational prowess of QuickBooks Online with the efficiency of Commerce

Most importantly, track orders, manage inventory, and handle bookkeeping effortlessly as you synchronize with Shopify, from order placement to fulfillment.

Key Features

  • Seamless Data Synchronization: This allows you to sync orders, inventory, and financial data between QuickBooks Online and Commerce for seamless integration.
  • Efficient Order Tracking: Easily track online orders from placement to fulfillment with the integration’s Shopify sync, ensuring a smooth sales process.
  • Simplified Bookkeeping: Save time and reduce manual data entry with the automated import of sales and purchase information into QuickBooks Online through QuickBooks Online + Commerce.

9. QuickBooks, Xero sync, and Synder

Rating: ⭐ 4.8

Pricing: Starting at $55.54/month with a 15-day free trial

This app allows you to sync, transfer store sales, fees, taxes, discounts, gift cards, shipping, items, customers, and POS transactions to Xero or QuickBooks

Simplify reconciliation, enjoy unlimited historical imports, and enjoy multi-currency support.

Key Features

  • Auto-Sync Shopify Data to QuickBooks or Xero:  Sync your Shopify sales, fees, inventory, taxes, and more to QuickBooks or Xero.
  • Customizable Sync Modes: Select daily summarized entries or individual sale sync mode for flexible integration.
  • Hassle-Free Historical Imports: Import years of historical transactions with complete duplicate protection for seamless integration.

10. A2X for QuickBooks or Xero

shopify and quickbooks online

Rating: ⭐ 4.9

Pricing: Starting at $19/month with a 30-day free trial

Welcome to ‘A2X for QuickBooks or Xero,’ where Shopify payout data transforms into organized summaries, reconciling seamlessly in QBO or Xero

Every transaction, from sales to fees, taxes, gift cards, and refunds, is accurately categorized, granting better visibility into your store’s performance.

Key Features

  • Accurate Sales Tracking in QuickBooks or Xero: Efficiently track your Shopify sales, fees, taxes, and more with precision in QuickBooks or Xero.
  • Tax Rule Assignments for Error-Free Taxation: Avoid overpaying taxes by assigning tax rules to every Shopify transaction type.
  • Seamless COGS Matching: Stay in control of the cost of Goods Sold (COGS) by seamlessly matching it with your Shopify sales.

11. WeIntegrate: QuickBooks Sync

shopify and quickbooks online

Rating: ⭐ 5

Pricing: Starting at $19/month with a 15-day free trial

Step into the future of seamless accounting with WeIntegrate, your very own virtual accountant at your service! 

Instant integration with QuickBooks Online empowers you to make smarter business decisions with real-time updates on financials, sales, and inventory within seconds of customer orders.

Key Features

  • Automatic Sales, Fulfillments, and Refunds Sync: Synchronize sales, fulfillments, and refunds with QuickBooks Online in real-time.
  • Instant Integration with Customer Orders: Experience instant integration as customers place orders in your store, ensuring up-to-date data.
  • Load Actual Sales in Detail or Bulk: Load actual sales data, not just journal entries, with flexibility to cater to individual customers or bulk items.

12. Link My Books for Xero and QBO

shopify and quickbooks online

Rating: ⭐ 5

Pricing: Starting at $17/month with a 14-day free trial

Brace yourself for a seamless experience as this app works wonders with each Shopify payout, breaking down sales, refunds, and fees into a pristine summary entry in Xero or QuickBooks. 

Its summary invoices align perfectly with the exact amount deposited by Shopify into your bank account, making reconciliation a one-click wonder.

Key Features

  • Effortless Reconciliation: Reconciling your sales with deposits into your bank now takes seconds.
  • Versatile Payment Gateway Support: Shopify Payments, PayPal, Klarna, and all other payment gateways are supported.
  • Multi-Store Integration: Seamlessly connect multiple stores to your Xero or QuickBooks account using Link My Book.

Conclusion

In conclusion, the article offers an array of powerful tools to streamline your e-commerce operations and financial management. 

Seamlessly integrate your Shopify store with these apps, making data entry a thing of the past. Take the plunge and invest in these time-saving apps to elevate your Shopify store to new heights.

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